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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0021s0980.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 24634.3 Da PI: 5.2081 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.7e-18 | 86 | 137 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrd + + r++lg+f++ae Aa a+++a+ +++g+ SapurV1A.0021s0980.1.p 86 SYRGVRRRP-WGKFAAEIRDSTR---HgVRVWLGTFDSAEAAALAYDQAAFSMRGA 137 69*******.**********422...25*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.22E-19 | 85 | 145 | No hit | No description |
SMART | SM00380 | 3.5E-35 | 86 | 150 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.958 | 86 | 144 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-22 | 86 | 146 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-13 | 86 | 136 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-30 | 86 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 87 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 110 | 126 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MDGSFFQYSN SDFSSESCFE SPDFFYGRSF NQSSLPFNEN DSDEMLLFGL ISEATQGTSK 60 TTSYNGVIKE EEVSSISKED PNKEKSYRGV RRRPWGKFAA EIRDSTRHGV RVWLGTFDSA 120 EAAALAYDQA AFSMRGAGAT LNFPVEKVRE SLKDMKCTDH EDGCSPVVAL KRKHSMRRKL 180 GSRSKKDRNV RIENVVVLED LGADYLEQLL NSSEDAASPC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-27 | 83 | 145 | 2 | 64 | ATERF1 |
3gcc_A | 6e-27 | 83 | 145 | 2 | 64 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00374 | DAP | Transfer from AT3G23240 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU228577 | 0.0 | CU228577.1 Populus EST from severe drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006379895.1 | 1e-134 | hypothetical protein POPTR_0008s16610g | ||||
Swissprot | Q8LDC8 | 8e-77 | ERF92_ARATH; Ethylene-responsive transcription factor 1B | ||||
TrEMBL | U5G8B2 | 1e-134 | U5G8B2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s16610.1 | 1e-134 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF311 | 33 | 199 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 7e-67 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0021s0980.1.p |