PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0021s0980.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 221aa    MW: 24634.3 Da    PI: 5.2081
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0021s0980.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-1886137256
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                              y+GVr+++ +g+++AeIrd +    +  r++lg+f++ae Aa a+++a+ +++g+
  SapurV1A.0021s0980.1.p  86 SYRGVRRRP-WGKFAAEIRDSTR---HgVRVWLGTFDSAEAAALAYDQAAFSMRGA 137
                             69*******.**********422...25*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.22E-1985145No hitNo description
SMARTSM003803.5E-3586150IPR001471AP2/ERF domain
PROSITE profilePS5103222.95886144IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2286146IPR016177DNA-binding domain
PfamPF008471.1E-1386136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-3086145IPR001471AP2/ERF domain
PRINTSPR003673.2E-108798IPR001471AP2/ERF domain
PRINTSPR003673.2E-10110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDGSFFQYSN SDFSSESCFE SPDFFYGRSF NQSSLPFNEN DSDEMLLFGL ISEATQGTSK  60
TTSYNGVIKE EEVSSISKED PNKEKSYRGV RRRPWGKFAA EIRDSTRHGV RVWLGTFDSA  120
EAAALAYDQA AFSMRGAGAT LNFPVEKVRE SLKDMKCTDH EDGCSPVVAL KRKHSMRRKL  180
GSRSKKDRNV RIENVVVLED LGADYLEQLL NSSEDAASPC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2783145264ATERF1
3gcc_A6e-2783145264ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2285770.0CU228577.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006379895.11e-134hypothetical protein POPTR_0008s16610g
SwissprotQ8LDC88e-77ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLU5G8B21e-134U5G8B2_POPTR; Uncharacterized protein
STRINGPOPTR_0008s16610.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.17e-67ethylene response factor 1